IL_6HCJ_088

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

6HCJ|1|51|A|3711, 6HCJ|1|51|A|3712

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_088 not in the Motif Atlas

Homologous match to IL_8C3A_092

Geometric discrepancy: 0.3965

The information below is about IL_8C3A_092

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58579.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

6HCJ|1|51|G|3710
6HCJ|1|51|A|3711
6HCJ|1|51|A|3712
6HCJ|1|51|U|3713
6HCJ|1|51|G|3714
*
6HCJ|1|51|C|3739
6HCJ|1|51|G|3740
6HCJ|1|51|C|3741

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain 33

Transfer RNA; tRNA

Chain A2

Small subunit ribosomal RNA; SSU rRNA