IL_6HCJ_089

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUCAAAGUG*CAAUGAAGC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|51|G|3714
6HCJ|1|51|U|3715
6HCJ|1|51|C|3716
6HCJ|1|51|A|3717
6HCJ|1|51|A|3718
6HCJ|1|51|A|3719
6HCJ|1|51|G|3720
6HCJ|1|51|U|3721
6HCJ|1|51|G|3722
*
6HCJ|1|51|C|3731
6HCJ|1|51|A|3732
6HCJ|1|51|A|3733
6HCJ|1|51|U|3734
6HCJ|1|51|G|3735
6HCJ|1|51|A|3736
6HCJ|1|51|A|3737
6HCJ|1|51|G|3738
6HCJ|1|51|C|3739

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain 33

Transfer RNA; tRNA

Chain A3

Ribosomal protein L8

Chain i3

60S ribosomal protein L36

Chain o3

eL42