IL_6HCJ_091

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

6HCJ|1|51|A|3901, 6HCJ|1|51|C|4560

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_091 not in the Motif Atlas

Homologous match to IL_8C3A_097

Geometric discrepancy: 0.2432

The information below is about IL_8C3A_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54678.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6HCJ|1|51|G|3900
6HCJ|1|51|A|3901
6HCJ|1|51|A|3902
*
6HCJ|1|51|U|4558
6HCJ|1|51|A|4559
6HCJ|1|51|C|4560
6HCJ|1|51|C|4561

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain B3

uL3

Chain P3

uL22