IL_6HCJ_093

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

6HCJ|1|51|G|4183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_093 not in the Motif Atlas

Homologous match to IL_8C3A_100

Geometric discrepancy: 0.2104

The information below is about IL_8C3A_100

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

6HCJ|1|51|U|3927
6HCJ|1|51|A|3928
6HCJ|1|51|G|3929
*
6HCJ|1|51|U|4181
6HCJ|1|51|G|4182
6HCJ|1|51|G|4183
6HCJ|1|51|G|4184

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain 33

Transfer RNA; tRNA

Chain A3

Ribosomal protein L8

Chain N3

Ribosomal protein L15

Chain o3

eL42