IL_6HCJ_099

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

6HCJ|1|51|A|4203

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_099 not in the Motif Atlas

Geometric match to IL_4V9F_079

Geometric discrepancy: 0.21

The information below is about IL_4V9F_079

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

6HCJ|1|51|G|4191
6HCJ|1|51|A|4192
*
6HCJ|1|51|U|4202
6HCJ|1|51|A|4203
6HCJ|1|51|C|4204

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain I3

60S ribosomal protein L10

Chain T3

eL21

Chain b3

eL29

Chain o3

eL42