IL_6HCJ_100

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAUC*GAC

Length

7 nucleotides

Bulged bases

6HCJ|1|51|A|4292

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_100 not in the Motif Atlas

Geometric match to IL_4V88_455

Geometric discrepancy: 0.2948

The information below is about IL_4V88_455

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6HCJ|1|51|G|4291
6HCJ|1|51|A|4292
6HCJ|1|51|U|4293
6HCJ|1|51|C|4294
*
6HCJ|1|51|G|4316
6HCJ|1|51|A|4317
6HCJ|1|51|C|4318

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain T3

eL21

Chain b3

eL29

Chain o3

eL42