IL_6HCJ_105

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_105 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.2193

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6HCJ|1|51|C|4412
6HCJ|1|51|C|4413
6HCJ|1|51|A|4414
6HCJ|1|51|A|4415
6HCJ|1|51|G|4416
*
6HCJ|1|51|C|4426
6HCJ|1|51|G|4427
6HCJ|1|51|A|4428
6HCJ|1|51|C|4429
6HCJ|1|51|G|4430

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain I3

60S ribosomal protein L10

Chain m3

eL40