IL_6HCJ_109
3D structure
- PDB id
- 6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CAUUG*CCAAGCG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCJ_109 not in the Motif Atlas
- Homologous match to IL_8GLP_315
- Geometric discrepancy: 0.2037
- The information below is about IL_8GLP_315
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_56912.1
- Basepair signature
- cWW-cWW-L-R-L-cWW-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6HCJ|1|51|C|4466
6HCJ|1|51|A|4467
6HCJ|1|51|U|4468
6HCJ|1|51|U|4469
6HCJ|1|51|G|4470
*
6HCJ|1|51|C|4485
6HCJ|1|51|C|4486
6HCJ|1|51|A|4487
6HCJ|1|51|A|4488
6HCJ|1|51|G|4489
6HCJ|1|51|C|4490
6HCJ|1|51|G|4491
Current chains
- Chain 51
- 28S ribosomal RNA
Nearby chains
- Chain B3
- uL3
- Chain H3
- uL6
- Chain O3
- uL13
- Chain V3
- Ribosomal protein L23
- Chain m3
- eL40
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