IL_6HCJ_109

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAUUG*CCAAGCG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|51|C|4466
6HCJ|1|51|A|4467
6HCJ|1|51|U|4468
6HCJ|1|51|U|4469
6HCJ|1|51|G|4470
*
6HCJ|1|51|C|4485
6HCJ|1|51|C|4486
6HCJ|1|51|A|4487
6HCJ|1|51|A|4488
6HCJ|1|51|G|4489
6HCJ|1|51|C|4490
6HCJ|1|51|G|4491

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain B3

uL3

Chain H3

uL6

Chain O3

uL13

Chain V3

Ribosomal protein L23

Chain m3

eL40