IL_6HCJ_125

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGAAACG*CUCGCC

Length

13 nucleotides

Bulged bases

6HCJ|1|51|C|4895, 6HCJ|1|51|U|4925

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|51|G|4890
6HCJ|1|51|G|4891
6HCJ|1|51|A|4892
6HCJ|1|51|A|4893
6HCJ|1|51|A|4894
6HCJ|1|51|C|4895
6HCJ|1|51|G|4896
*
6HCJ|1|51|C|4924
6HCJ|1|51|U|4925
6HCJ|1|51|C|4926
6HCJ|1|51|G|4927
6HCJ|1|51|C|4928
6HCJ|1|51|C|4929

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain E3

60S ribosomal protein L6

Chain M3

Ribosomal protein L14

Chain O3

uL13