IL_6HCJ_130

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAC*GUCG

Length

7 nucleotides

Bulged bases

6HCJ|1|71|C|63

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_130 not in the Motif Atlas

Geometric match to IL_7A0S_026

Geometric discrepancy: 0.2417

The information below is about IL_7A0S_026

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6HCJ|1|71|C|15
6HCJ|1|71|A|16
6HCJ|1|71|C|17
*
6HCJ|1|71|G|61
6HCJ|1|71|U|62
6HCJ|1|71|C|63
6HCJ|1|71|G|64

Current chains

Chain 71

5S ribosomal RNA

Nearby chains

Chain 51

Large subunit ribosomal RNA; LSU rRNA

Chain D3

60S ribosomal protein L5

Chain I3

60S ribosomal protein L10

Chain J3

Ribosomal protein L11