IL_6HCJ_138

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAAA*UGACG

Length

9 nucleotides

Bulged bases

6HCJ|1|A2|A|516

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_138 not in the Motif Atlas

Geometric match to IL_4WF9_016

Geometric discrepancy: 0.3321

The information below is about IL_4WF9_016

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

6HCJ|1|A2|C|37
6HCJ|1|A2|A|38
6HCJ|1|A2|A|39
6HCJ|1|A2|A|40
*
6HCJ|1|A2|U|514
6HCJ|1|A2|G|515
6HCJ|1|A2|A|516
6HCJ|1|A2|C|517
6HCJ|1|A2|G|518

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain F2

eS4

Chain K2

Ribosomal protein S9 (Predicted)

Chain Z2

eS24