IL_6HCJ_143

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UCCUUU*AUUCG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_143 not in the Motif Atlas

Homologous match to IL_4V88_393

Geometric discrepancy: 0.2569

The information below is about IL_4V88_393

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

6HCJ|1|A2|U|116
6HCJ|1|A2|C|117
6HCJ|1|A2|C|118
6HCJ|1|A2|U|119
6HCJ|1|A2|U|120
6HCJ|1|A2|U|121
*
6HCJ|1|A2|A|343
6HCJ|1|A2|U|344
6HCJ|1|A2|U|345
6HCJ|1|A2|C|346
6HCJ|1|A2|G|347

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain F2

eS4

Chain J2

eS8