3D structure

PDB id
6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
UGGAUAAC*GCUAAUACA
Length
17 nucleotides
Bulged bases
6HCJ|1|A2|U|172
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6HCJ|1|A2|U|144
6HCJ|1|A2|G|145
6HCJ|1|A2|G|146
6HCJ|1|A2|A|147
6HCJ|1|A2|U|148
6HCJ|1|A2|A|149
6HCJ|1|A2|A|150
6HCJ|1|A2|C|151
*
6HCJ|1|A2|G|167
6HCJ|1|A2|C|168
6HCJ|1|A2|U|169
6HCJ|1|A2|A|170
6HCJ|1|A2|A|171
6HCJ|1|A2|U|172
6HCJ|1|A2|A|173
6HCJ|1|A2|C|174
6HCJ|1|A2|A|175

Current chains

Chain A2
18S ribosomal RNA

Nearby chains

Chain H2
40S ribosomal protein S6
Chain Z2
eS24

Coloring options:

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