IL_6HCJ_148

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCACG*CGGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|A2|G|316
6HCJ|1|A2|C|317
6HCJ|1|A2|A|318
6HCJ|1|A2|C|319
6HCJ|1|A2|G|320
*
6HCJ|1|A2|C|331
6HCJ|1|A2|G|332
6HCJ|1|A2|G|333
6HCJ|1|A2|C|334

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain F2

eS4

Chain H2

40S ribosomal protein S6