IL_6HCJ_152

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGA*UAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_152 not in the Motif Atlas

Homologous match to IL_4V88_405

Geometric discrepancy: 0.2516

The information below is about IL_4V88_405

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

48

Unit IDs

6HCJ|1|A2|G|437
6HCJ|1|A2|G|438
6HCJ|1|A2|A|439
*
6HCJ|1|A2|U|454
6HCJ|1|A2|A|455
6HCJ|1|A2|C|456

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain H2

40S ribosomal protein S6

Chain J2

eS8

Chain V3

Ribosomal protein L23