IL_6HCJ_155

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAG*CGAGGAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_155 not in the Motif Atlas

Homologous match to IL_8C3A_420

Geometric discrepancy: 0.275

The information below is about IL_8C3A_420

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14882.1

Basepair signature

cWW-tSH-L-cWW-L-L-R-L

Number of instances in this motif group

1

Unit IDs

6HCJ|1|A2|G|563
6HCJ|1|A2|A|564
6HCJ|1|A2|G|565
*
6HCJ|1|A2|C|585
6HCJ|1|A2|G|586
6HCJ|1|A2|A|587
6HCJ|1|A2|G|588
6HCJ|1|A2|G|589
6HCJ|1|A2|A|590
6HCJ|1|A2|U|591
6HCJ|1|A2|C|592

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain K2

Ribosomal protein S9 (Predicted)

Chain f2

40S ribosomal protein S30