IL_6HCJ_156
3D structure
- PDB id
- 6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AGGGCAAGUC*GCU
- Length
- 13 nucleotides
- Bulged bases
- 6HCJ|1|A2|U|607
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCJ_156 not in the Motif Atlas
- Geometric match to IL_4V88_470
- Geometric discrepancy: 0.2686
- The information below is about IL_4V88_470
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
6HCJ|1|A2|A|599
6HCJ|1|A2|G|600
6HCJ|1|A2|G|601
6HCJ|1|A2|G|602
6HCJ|1|A2|C|603
6HCJ|1|A2|A|604
6HCJ|1|A2|A|605
6HCJ|1|A2|G|606
6HCJ|1|A2|U|607
6HCJ|1|A2|C|608
*
6HCJ|1|A2|G|635
6HCJ|1|A2|C|636
6HCJ|1|A2|U|637
Current chains
- Chain A2
- 18S ribosomal RNA
Nearby chains
- Chain D2
- uS5
- Chain E2
- uS3
- Chain K2
- Ribosomal protein S9 (Predicted)
- Chain f2
- 40S ribosomal protein S30
Coloring options: