3D structure

PDB id
6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
AGGGCAAGUC*GCU
Length
13 nucleotides
Bulged bases
6HCJ|1|A2|U|607
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6HCJ_156 not in the Motif Atlas
Geometric match to IL_4V88_470
Geometric discrepancy: 0.2686
The information below is about IL_4V88_470
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
Isolated non-canonical cWW pair
Motif group
IL_44258.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
301

Unit IDs

6HCJ|1|A2|A|599
6HCJ|1|A2|G|600
6HCJ|1|A2|G|601
6HCJ|1|A2|G|602
6HCJ|1|A2|C|603
6HCJ|1|A2|A|604
6HCJ|1|A2|A|605
6HCJ|1|A2|G|606
6HCJ|1|A2|U|607
6HCJ|1|A2|C|608
*
6HCJ|1|A2|G|635
6HCJ|1|A2|C|636
6HCJ|1|A2|U|637

Current chains

Chain A2
18S ribosomal RNA

Nearby chains

Chain D2
uS5
Chain E2
uS3
Chain K2
Ribosomal protein S9 (Predicted)
Chain f2
40S ribosomal protein S30

Coloring options:


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