IL_6HCJ_165

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGGUU*AACUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_165 not in the Motif Atlas

Homologous match to IL_8P9A_416

Geometric discrepancy: 0.4555

The information below is about IL_8P9A_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|A2|C|879
6HCJ|1|A2|G|880
6HCJ|1|A2|G|881
6HCJ|1|A2|U|882
6HCJ|1|A2|U|883
*
6HCJ|1|A2|A|903
6HCJ|1|A2|A|904
6HCJ|1|A2|C|905
6HCJ|1|A2|U|906
6HCJ|1|A2|G|907

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain M2

Ribosomal protein S11

Chain R3

eL19