IL_6HCJ_166

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AG*CAUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_166 not in the Motif Atlas

Geometric match to IL_4V88_428

Geometric discrepancy: 0.2686

The information below is about IL_4V88_428

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.4

Basepair signature

cWW-cWW-tSH-cWW-R

Number of instances in this motif group

28

Unit IDs

6HCJ|1|A2|A|922
6HCJ|1|A2|G|923
*
6HCJ|1|A2|C|1019
6HCJ|1|A2|A|1020
6HCJ|1|A2|U|1021
6HCJ|1|A2|U|1022

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain O2

uS15

Chain X2

Ribosomal protein S15a

Chain c2

40S ribosomal protein S27