IL_6HCJ_167

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGAC*GUUUU

Length

9 nucleotides

Bulged bases

6HCJ|1|A2|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_167 not in the Motif Atlas

Geometric match to IL_4V88_429

Geometric discrepancy: 0.18

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

6HCJ|1|A2|G|924
6HCJ|1|A2|G|925
6HCJ|1|A2|A|926
6HCJ|1|A2|C|927
*
6HCJ|1|A2|G|1014
6HCJ|1|A2|U|1015
6HCJ|1|A2|U|1016
6HCJ|1|A2|U|1017
6HCJ|1|A2|U|1018

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain O2

uS15

Chain c2

40S ribosomal protein S27