IL_6HCJ_170

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGUAUUG*CAAGACG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|A2|C|941
6HCJ|1|A2|G|942
6HCJ|1|A2|U|943
6HCJ|1|A2|A|944
6HCJ|1|A2|U|945
6HCJ|1|A2|U|946
6HCJ|1|A2|G|947
*
6HCJ|1|A2|C|979
6HCJ|1|A2|A|980
6HCJ|1|A2|A|981
6HCJ|1|A2|G|982
6HCJ|1|A2|A|983
6HCJ|1|A2|C|984
6HCJ|1|A2|G|985

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain A3

Ribosomal protein L8

Chain C2

40S ribosomal protein S3a

Chain P2

uS11

Chain b2

eS26

Chain p3

eL43