IL_6HCJ_178

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGAAGGG*CCCUUU

Length

13 nucleotides

Bulged bases

6HCJ|1|A2|G|1207

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_178 not in the Motif Atlas

Geometric match to IL_6O5F_001

Geometric discrepancy: 0.2876

The information below is about IL_6O5F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

6HCJ|1|A2|G|1206
6HCJ|1|A2|G|1207
6HCJ|1|A2|A|1208
6HCJ|1|A2|A|1209
6HCJ|1|A2|G|1210
6HCJ|1|A2|G|1211
6HCJ|1|A2|G|1212
*
6HCJ|1|A2|C|1687
6HCJ|1|A2|C|1688
6HCJ|1|A2|C|1689
6HCJ|1|A2|U|1690
6HCJ|1|A2|U|1691
6HCJ|1|A2|U|1692

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain D2

uS5

Chain b2

eS26

Chain v3

mRNA