IL_6HCJ_181

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_181 not in the Motif Atlas

Homologous match to IL_4V88_445

Geometric discrepancy: 0.257

The information below is about IL_4V88_445

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

6HCJ|1|A2|G|1235
6HCJ|1|A2|G|1236
*
6HCJ|1|A2|C|1521
6HCJ|1|A2|A|1522
6HCJ|1|A2|C|1523

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain 33

Transfer RNA; tRNA

Chain Q2

uS19

Chain T2

uS13