IL_6HCJ_184

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

6HCJ|1|A2|U|1326

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_184 not in the Motif Atlas

Homologous match to IL_4V88_449

Geometric discrepancy: 0.2817

The information below is about IL_4V88_449

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6HCJ|1|A2|G|1325
6HCJ|1|A2|U|1326
6HCJ|1|A2|G|1327
*
6HCJ|1|A2|C|1502
6HCJ|1|A2|C|1503

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain L2

eS10

Chain e2

uS14