IL_6HCJ_185

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUGCAUGG*UCUGUGAUGC

Length

18 nucleotides

Bulged bases

6HCJ|1|A2|C|1331, 6HCJ|1|A2|U|1494, 6HCJ|1|A2|G|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|A2|G|1328
6HCJ|1|A2|U|1329
6HCJ|1|A2|G|1330
6HCJ|1|A2|C|1331
6HCJ|1|A2|A|1332
6HCJ|1|A2|U|1333
6HCJ|1|A2|G|1334
6HCJ|1|A2|G|1335
*
6HCJ|1|A2|U|1492
6HCJ|1|A2|C|1493
6HCJ|1|A2|U|1494
6HCJ|1|A2|G|1495
6HCJ|1|A2|U|1496
6HCJ|1|A2|G|1497
6HCJ|1|A2|A|1498
6HCJ|1|A2|U|1499
6HCJ|1|A2|G|1500
6HCJ|1|A2|C|1501

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain E2

uS3

Chain L2

eS10

Chain V2

uS10

Chain e2

uS14

Chain q3

Transfer RNA; tRNA

Chain v3

mRNA