IL_6HCJ_190

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUAACUA*UUCUUAG

Length

14 nucleotides

Bulged bases

6HCJ|1|A2|C|1403, 6HCJ|1|A2|U|1404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|A2|C|1399
6HCJ|1|A2|U|1400
6HCJ|1|A2|A|1401
6HCJ|1|A2|A|1402
6HCJ|1|A2|C|1403
6HCJ|1|A2|U|1404
6HCJ|1|A2|A|1405
*
6HCJ|1|A2|U|1441
6HCJ|1|A2|U|1442
6HCJ|1|A2|C|1443
6HCJ|1|A2|U|1444
6HCJ|1|A2|U|1445
6HCJ|1|A2|A|1446
6HCJ|1|A2|G|1447

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain R2

Ribosomal protein S16

Chain V2

uS10

Chain h2

RACK1