IL_6HCJ_196
3D structure
- PDB id
- 6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GCCC*GUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCJ_196 not in the Motif Atlas
- Homologous match to IL_8P9A_453
- Geometric discrepancy: 0.2111
- The information below is about IL_8P9A_453
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_25873.2
- Basepair signature
- cWW-cSH-cWS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6HCJ|1|A2|G|1702
6HCJ|1|A2|C|1703
6HCJ|1|A2|C|1704
6HCJ|1|A2|C|1705
*
6HCJ|1|A2|G|1829
6HCJ|1|A2|U|1830
6HCJ|1|A2|A|1831
6HCJ|1|A2|A|1832
6HCJ|1|A2|C|1833
Current chains
- Chain A2
- 18S ribosomal RNA
Nearby chains
- Chain 33
- Transfer RNA; tRNA
- Chain 51
- Large subunit ribosomal RNA; LSU rRNA
- Chain n3
- eL41
- Chain v3
- mRNA
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