IL_6HCJ_197

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUCGCUA*UAAAAGUC

Length

15 nucleotides

Bulged bases

6HCJ|1|A2|A|1824, 6HCJ|1|A2|A|1825

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|A2|G|1706
6HCJ|1|A2|U|1707
6HCJ|1|A2|C|1708
6HCJ|1|A2|G|1709
6HCJ|1|A2|C|1710
6HCJ|1|A2|U|1711
6HCJ|1|A2|A|1712
*
6HCJ|1|A2|U|1821
6HCJ|1|A2|A|1822
6HCJ|1|A2|A|1823
6HCJ|1|A2|A|1824
6HCJ|1|A2|A|1825
6HCJ|1|A2|G|1826
6HCJ|1|A2|U|1827
6HCJ|1|A2|C|1828

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain 51

Large subunit ribosomal RNA; LSU rRNA

Chain Y2

uS12

Chain n3

eL41

Chain q3

Transfer RNA; tRNA

Chain v3

mRNA