IL_6HCJ_206

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UC*GAA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_206 not in the Motif Atlas

Geometric match to IL_5TBW_070

Geometric discrepancy: 0.2255

The information below is about IL_5TBW_070

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

6HCJ|1|A2|U|1840
6HCJ|1|A2|C|1841
*
6HCJ|1|A2|G|1858
6HCJ|1|A2|A|1859
6HCJ|1|A2|A|1860

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain P2

uS11

Chain b2

eS26

Chain n3

eL41