IL_6HCJ_217

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAGGAUUCAAC*GCGCAUUUCCAC

Length

23 nucleotides

Bulged bases

6HCJ|1|51|C|685, 6HCJ|1|51|U|687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|51|G|462
6HCJ|1|51|A|463
6HCJ|1|51|G|464
6HCJ|1|51|G|465
6HCJ|1|51|A|466
6HCJ|1|51|U|467
6HCJ|1|51|U|468
6HCJ|1|51|C|469
6HCJ|1|51|A|470
6HCJ|1|51|A|471
6HCJ|1|51|C|472
*
6HCJ|1|51|G|682
6HCJ|1|51|C|683
6HCJ|1|51|G|684
6HCJ|1|51|C|685
6HCJ|1|51|A|686
6HCJ|1|51|U|687
6HCJ|1|51|U|688
6HCJ|1|51|U|689
6HCJ|1|51|C|690
6HCJ|1|51|C|691
6HCJ|1|51|A|692
6HCJ|1|51|C|693

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain E3

60S ribosomal protein L6

Chain r3

eL28