IL_6HCJ_220

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCGGUCCGGCCG*CGGCGACCGGCC

Length

24 nucleotides

Bulged bases

6HCJ|1|51|C|481|||A, 6HCJ|1|51|G|666, 6HCJ|1|51|A|667, 6HCJ|1|51|C|668

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|51|G|481
6HCJ|1|51|C|481|||A
6HCJ|1|51|G|482
6HCJ|1|51|G|483
6HCJ|1|51|U|484
6HCJ|1|51|C|485
6HCJ|1|51|C|486
6HCJ|1|51|G|487
6HCJ|1|51|G|488
6HCJ|1|51|C|489
6HCJ|1|51|C|490
6HCJ|1|51|G|491
*
6HCJ|1|51|C|662
6HCJ|1|51|G|663
6HCJ|1|51|G|664
6HCJ|1|51|C|665
6HCJ|1|51|G|666
6HCJ|1|51|A|667
6HCJ|1|51|C|668
6HCJ|1|51|C|669
6HCJ|1|51|G|670
6HCJ|1|51|G|671
6HCJ|1|51|C|672
6HCJ|1|51|C|673

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain C3

uL4

Chain Q3

eL18

Chain r3

eL28