IL_6HCJ_226

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCACGGCGCGA*UCGCGCCGUCGG

Length

23 nucleotides

Bulged bases

6HCJ|1|51|C|1210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|51|C|1085
6HCJ|1|51|C|1086
6HCJ|1|51|A|1087
6HCJ|1|51|C|1088
6HCJ|1|51|G|1089
6HCJ|1|51|G|1090
6HCJ|1|51|C|1091
6HCJ|1|51|G|1092
6HCJ|1|51|C|1093
6HCJ|1|51|G|1094
6HCJ|1|51|A|1095
*
6HCJ|1|51|U|1201
6HCJ|1|51|C|1202
6HCJ|1|51|G|1203
6HCJ|1|51|C|1204
6HCJ|1|51|G|1205
6HCJ|1|51|C|1206
6HCJ|1|51|C|1207
6HCJ|1|51|G|1208
6HCJ|1|51|U|1209
6HCJ|1|51|C|1210
6HCJ|1|51|G|1211
6HCJ|1|51|G|1212

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain F3

uL30

Chain T3

eL21