IL_6HCJ_231

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGGUCUUGGG*CUCAACCU

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|51|A|1751
6HCJ|1|51|G|1752
6HCJ|1|51|G|1753
6HCJ|1|51|U|1754
6HCJ|1|51|C|1755
6HCJ|1|51|U|1756
6HCJ|1|51|U|1757
6HCJ|1|51|G|1758
6HCJ|1|51|G|1759
6HCJ|1|51|G|1760
*
6HCJ|1|51|C|1772
6HCJ|1|51|U|1773
6HCJ|1|51|C|1774
6HCJ|1|51|A|1775
6HCJ|1|51|A|1776
6HCJ|1|51|C|1777
6HCJ|1|51|C|1778
6HCJ|1|51|U|1779

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain D3

60S ribosomal protein L5

Chain I3

60S ribosomal protein L10

Chain q3

Transfer RNA; tRNA