IL_6HCJ_235
3D structure
- PDB id
- 6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UGAUAUAGACAGCAGGAUGGUGGCCAUGGAAGUCGGAAUCCGCUAAGGAGUG*CUCACCUGCCGAAUCA
- Length
- 68 nucleotides
- Bulged bases
- 6HCJ|1|51|A|1956, 6HCJ|1|51|A|1958, 6HCJ|1|51|A|1960, 6HCJ|1|51|C|1966, 6HCJ|1|51|A|1967, 6HCJ|1|51|G|1968, 6HCJ|1|51|U|1971, 6HCJ|1|51|G|1972, 6HCJ|1|51|C|1996, 6HCJ|1|51|U|1997, 6HCJ|1|51|G|2000, 6HCJ|1|51|C|2018, 6HCJ|1|51|C|2022, 6HCJ|1|51|A|2026
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCJ|1|51|U|1954
6HCJ|1|51|G|1955
6HCJ|1|51|A|1956
6HCJ|1|51|U|1957
6HCJ|1|51|A|1958
6HCJ|1|51|U|1959
6HCJ|1|51|A|1960
6HCJ|1|51|G|1961
6HCJ|1|51|A|1962
6HCJ|1|51|C|1963
6HCJ|1|51|A|1964
6HCJ|1|51|G|1965
6HCJ|1|51|C|1966
6HCJ|1|51|A|1967
6HCJ|1|51|G|1968
6HCJ|1|51|G|1969
6HCJ|1|51|A|1970
6HCJ|1|51|U|1971
6HCJ|1|51|G|1972
6HCJ|1|51|G|1973
6HCJ|1|51|U|1974
6HCJ|1|51|G|1975
6HCJ|1|51|G|1976
6HCJ|1|51|C|1977
6HCJ|1|51|C|1978
6HCJ|1|51|A|1979
6HCJ|1|51|U|1980
6HCJ|1|51|G|1981
6HCJ|1|51|G|1982
6HCJ|1|51|A|1983
6HCJ|1|51|A|1984
6HCJ|1|51|G|1985
6HCJ|1|51|U|1986
6HCJ|1|51|C|1987
6HCJ|1|51|G|1988
6HCJ|1|51|G|1989
6HCJ|1|51|A|1990
6HCJ|1|51|A|1991
6HCJ|1|51|U|1992
6HCJ|1|51|C|1993
6HCJ|1|51|C|1994
6HCJ|1|51|G|1995
6HCJ|1|51|C|1996
6HCJ|1|51|U|1997
6HCJ|1|51|A|1998
6HCJ|1|51|A|1999
6HCJ|1|51|G|2000
6HCJ|1|51|G|2001
6HCJ|1|51|A|2002
6HCJ|1|51|G|2003
6HCJ|1|51|U|2004
6HCJ|1|51|G|2005
*
6HCJ|1|51|C|2014
6HCJ|1|51|U|2015
6HCJ|1|51|C|2016
6HCJ|1|51|A|2017
6HCJ|1|51|C|2018
6HCJ|1|51|C|2019
6HCJ|1|51|U|2020
6HCJ|1|51|G|2021
6HCJ|1|51|C|2022
6HCJ|1|51|C|2023
6HCJ|1|51|G|2024
6HCJ|1|51|A|2025
6HCJ|1|51|A|2026
6HCJ|1|51|U|2027
6HCJ|1|51|C|2028
6HCJ|1|51|A|2029
Current chains
- Chain 51
- 28S ribosomal RNA
Nearby chains
- Chain H3
- uL6
- Chain I3
- 60S ribosomal protein L10
- Chain S3
- eL20
- Chain m3
- eL40
- Chain t3
- uL10
- Chain u3
- Ribosomal protein L12
Coloring options: