IL_6HCJ_236

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCGGUGAG*CCGCCGC

Length

15 nucleotides

Bulged bases

6HCJ|1|51|A|2300

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|51|G|2294
6HCJ|1|51|C|2295
6HCJ|1|51|G|2296
6HCJ|1|51|G|2297
6HCJ|1|51|U|2298
6HCJ|1|51|G|2299
6HCJ|1|51|A|2300
6HCJ|1|51|G|2301
*
6HCJ|1|51|C|2334
6HCJ|1|51|C|2335
6HCJ|1|51|G|2336
6HCJ|1|51|C|2337
6HCJ|1|51|C|2338
6HCJ|1|51|G|2339
6HCJ|1|51|C|2340

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain 81

5.8S ribosomal RNA; 5.8S rRNA

Chain C3

uL4

Chain Q3

eL18

Chain a3

uL15

Chain e3

eL32

Chain r3

eL28