IL_6HCJ_237

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCCUUGAAGCCUAGGG*CCCGGGUGGAGC

Length

28 nucleotides

Bulged bases

6HCJ|1|51|U|2305, 6HCJ|1|51|A|2313

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|51|G|2301
6HCJ|1|51|C|2302
6HCJ|1|51|C|2303
6HCJ|1|51|U|2304
6HCJ|1|51|U|2305
6HCJ|1|51|G|2306
6HCJ|1|51|A|2307
6HCJ|1|51|A|2308
6HCJ|1|51|G|2309
6HCJ|1|51|C|2310
6HCJ|1|51|C|2311
6HCJ|1|51|U|2312
6HCJ|1|51|A|2313
6HCJ|1|51|G|2314
6HCJ|1|51|G|2315
6HCJ|1|51|G|2316
*
6HCJ|1|51|C|2323
6HCJ|1|51|C|2324
6HCJ|1|51|C|2325
6HCJ|1|51|G|2326
6HCJ|1|51|G|2327
6HCJ|1|51|G|2328
6HCJ|1|51|U|2329
6HCJ|1|51|G|2330
6HCJ|1|51|G|2331
6HCJ|1|51|A|2332
6HCJ|1|51|G|2333
6HCJ|1|51|C|2334

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain 81

5.8S ribosomal RNA; 5.8S rRNA

Chain C3

uL4

Chain Y3

Ribosomal protein L26

Chain e3

eL32

Chain r3

eL28