IL_6HCJ_241

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGGAGAAG*CCCUUGAAAAUCCG

Length

22 nucleotides

Bulged bases

6HCJ|1|51|C|2739, 6HCJ|1|51|U|2740

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|51|C|2595
6HCJ|1|51|G|2596
6HCJ|1|51|G|2597
6HCJ|1|51|A|2598
6HCJ|1|51|G|2599
6HCJ|1|51|A|2600
6HCJ|1|51|A|2601
6HCJ|1|51|G|2602
*
6HCJ|1|51|C|2737
6HCJ|1|51|C|2738
6HCJ|1|51|C|2739
6HCJ|1|51|U|2740
6HCJ|1|51|U|2741
6HCJ|1|51|G|2742
6HCJ|1|51|A|2743
6HCJ|1|51|A|2744
6HCJ|1|51|A|2745
6HCJ|1|51|A|2746
6HCJ|1|51|U|2747
6HCJ|1|51|C|2748
6HCJ|1|51|C|2749
6HCJ|1|51|G|2750

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain A3

Ribosomal protein L8

Chain g3

eL34

Chain p3

eL43