IL_6HCJ_244

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGAACAAUGUAGGUAAG*CCUACCUACUAUCC

Length

31 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|51|G|2830
6HCJ|1|51|G|2831
6HCJ|1|51|A|2832
6HCJ|1|51|A|2833
6HCJ|1|51|C|2834
6HCJ|1|51|A|2835
6HCJ|1|51|A|2836
6HCJ|1|51|U|2837
6HCJ|1|51|G|2838
6HCJ|1|51|U|2839
6HCJ|1|51|A|2840
6HCJ|1|51|G|2841
6HCJ|1|51|G|2842
6HCJ|1|51|U|2843
6HCJ|1|51|A|2844
6HCJ|1|51|A|2845
6HCJ|1|51|G|2846
*
6HCJ|1|51|C|3842
6HCJ|1|51|C|3843
6HCJ|1|51|U|3844
6HCJ|1|51|A|3845
6HCJ|1|51|C|3846
6HCJ|1|51|C|3847
6HCJ|1|51|U|3848
6HCJ|1|51|A|3849
6HCJ|1|51|C|3850
6HCJ|1|51|U|3851
6HCJ|1|51|A|3852
6HCJ|1|51|U|3853
6HCJ|1|51|C|3854
6HCJ|1|51|C|3855

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain B3

uL3

Chain P3

uL22

Chain V3

Ribosomal protein L23

Chain d3

eL31