IL_6HCJ_245

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGGAAGUCGG*CUGUCC

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|51|G|2846
6HCJ|1|51|G|2847
6HCJ|1|51|G|2848
6HCJ|1|51|A|2849
6HCJ|1|51|A|2850
6HCJ|1|51|G|2851
6HCJ|1|51|U|2852
6HCJ|1|51|C|2853
6HCJ|1|51|G|2854
6HCJ|1|51|G|2855
*
6HCJ|1|51|C|3837
6HCJ|1|51|U|3838
6HCJ|1|51|G|3839
6HCJ|1|51|U|3840
6HCJ|1|51|C|3841
6HCJ|1|51|C|3842

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain B3

uL3

Chain V3

Ribosomal protein L23