IL_6HCJ_251

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGAGACAUGA*UGAUCGUUUUUU

Length

22 nucleotides

Bulged bases

6HCJ|1|51|C|3948

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|51|A|3943
6HCJ|1|51|G|3944
6HCJ|1|51|A|3945
6HCJ|1|51|G|3946
6HCJ|1|51|A|3947
6HCJ|1|51|C|3948
6HCJ|1|51|A|3949
6HCJ|1|51|U|3950
6HCJ|1|51|G|3951
6HCJ|1|51|A|3952
*
6HCJ|1|51|U|4060
6HCJ|1|51|G|4061
6HCJ|1|51|A|4062
6HCJ|1|51|U|4063
6HCJ|1|51|C|4064
6HCJ|1|51|G|4065
6HCJ|1|51|U|4066
6HCJ|1|51|U|4067
6HCJ|1|51|U|4068
6HCJ|1|51|U|4069
6HCJ|1|51|U|4070
6HCJ|1|51|U|4071

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain C2

40S ribosomal protein S3a

Chain i3

60S ribosomal protein L36

Chain w3

uL1