IL_6HCJ_252

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGUGUAGAAUAAGUGGGAGGCC*GGCCGCCGGUGAAAUACCACUAC

Length

45 nucleotides

Bulged bases

6HCJ|1|51|U|3957, 6HCJ|1|51|G|3958, 6HCJ|1|51|A|3962, 6HCJ|1|51|U|3964

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|51|G|3955
6HCJ|1|51|G|3956
6HCJ|1|51|U|3957
6HCJ|1|51|G|3958
6HCJ|1|51|U|3959
6HCJ|1|51|A|3960
6HCJ|1|51|G|3961
6HCJ|1|51|A|3962
6HCJ|1|51|A|3963
6HCJ|1|51|U|3964
6HCJ|1|51|A|3965
6HCJ|1|51|A|3966
6HCJ|1|51|G|3967
6HCJ|1|51|U|3968
6HCJ|1|51|G|3969
6HCJ|1|51|G|3970
6HCJ|1|51|G|3971
6HCJ|1|51|A|3972
6HCJ|1|51|G|3973
6HCJ|1|51|G|3974
6HCJ|1|51|C|3975
6HCJ|1|51|C|3976
*
6HCJ|1|51|G|4035
6HCJ|1|51|G|4036
6HCJ|1|51|C|4037
6HCJ|1|51|C|4038
6HCJ|1|51|G|4039
6HCJ|1|51|C|4040
6HCJ|1|51|C|4041
6HCJ|1|51|G|4042
6HCJ|1|51|G|4043
6HCJ|1|51|U|4044
6HCJ|1|51|G|4045
6HCJ|1|51|A|4046
6HCJ|1|51|A|4047
6HCJ|1|51|A|4048
6HCJ|1|51|U|4049
6HCJ|1|51|A|4050
6HCJ|1|51|C|4051
6HCJ|1|51|C|4052
6HCJ|1|51|A|4053
6HCJ|1|51|C|4054
6HCJ|1|51|U|4055
6HCJ|1|51|A|4056
6HCJ|1|51|C|4057

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain 33

Transfer RNA; tRNA

Chain a2

eS25

Chain w3

uL1