IL_6HCJ_262

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGCCGGAGC*GAACCUGGCG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|51|C|4736
6HCJ|1|51|G|4737
6HCJ|1|51|C|4738
6HCJ|1|51|C|4739
6HCJ|1|51|G|4740
6HCJ|1|51|G|4743
6HCJ|1|51|A|4744
6HCJ|1|51|G|4745
6HCJ|1|51|C|4746
*
6HCJ|1|51|G|4954
6HCJ|1|51|A|4955
6HCJ|1|51|A|4956
6HCJ|1|51|C|4957
6HCJ|1|51|C|4958
6HCJ|1|51|U|4959
6HCJ|1|51|G|4960
6HCJ|1|51|G|4961
6HCJ|1|51|C|4962
6HCJ|1|51|G|4963

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain 81

5.8S ribosomal RNA; 5.8S rRNA

Chain B3

uL3

Chain f3

eL33