IL_6HCJ_263

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCUCGGAUAGCCG*CGGUGCGGAGAG

Length

25 nucleotides

Bulged bases

6HCJ|1|51|C|4757, 6HCJ|1|51|U|4758, 6HCJ|1|51|A|4764, 6HCJ|1|51|G|4870, 6HCJ|1|51|C|4871, 6HCJ|1|51|G|4873, 6HCJ|1|51|A|4876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|51|C|4756
6HCJ|1|51|C|4757
6HCJ|1|51|U|4758
6HCJ|1|51|C|4759
6HCJ|1|51|G|4760
6HCJ|1|51|G|4761
6HCJ|1|51|A|4762
6HCJ|1|51|U|4763
6HCJ|1|51|A|4764
6HCJ|1|51|G|4765
6HCJ|1|51|C|4766
6HCJ|1|51|C|4767
6HCJ|1|51|G|4768
*
6HCJ|1|51|C|4866
6HCJ|1|51|G|4867
6HCJ|1|51|G|4868
6HCJ|1|51|U|4869
6HCJ|1|51|G|4870
6HCJ|1|51|C|4871
6HCJ|1|51|G|4872
6HCJ|1|51|G|4873
6HCJ|1|51|A|4874
6HCJ|1|51|G|4875
6HCJ|1|51|A|4876
6HCJ|1|51|G|4877

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain E3

60S ribosomal protein L6

Chain H3

uL6

Chain M3

Ribosomal protein L14

Chain O3

uL13

Chain S3

eL20