IL_6HCJ_269

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGUUUCGUACG*UUGAAAGUCAGCC

Length

24 nucleotides

Bulged bases

6HCJ|1|51|U|5006, 6HCJ|1|51|G|5041, 6HCJ|1|51|G|5049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|51|G|4999
6HCJ|1|51|G|5000
6HCJ|1|51|U|5001
6HCJ|1|51|U|5002
6HCJ|1|51|U|5003
6HCJ|1|51|C|5004
6HCJ|1|51|G|5005
6HCJ|1|51|U|5006
6HCJ|1|51|A|5007
6HCJ|1|51|C|5008
6HCJ|1|51|G|5009
*
6HCJ|1|51|U|5039
6HCJ|1|51|U|5040
6HCJ|1|51|G|5041
6HCJ|1|51|A|5042
6HCJ|1|51|A|5043
6HCJ|1|51|A|5044
6HCJ|1|51|G|5045
6HCJ|1|51|U|5046
6HCJ|1|51|C|5047
6HCJ|1|51|A|5048
6HCJ|1|51|G|5049
6HCJ|1|51|C|5050
6HCJ|1|51|C|5051

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain B3

uL3

Chain d3

eL31