IL_6HCJ_272

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UAGCA*UAUUA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_272 not in the Motif Atlas

Geometric match to IL_7VYX_008

Geometric discrepancy: 0.3396

The information below is about IL_7VYX_008

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.1

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

10

Unit IDs

6HCJ|1|A2|U|21
6HCJ|1|A2|A|22
6HCJ|1|A2|G|23
6HCJ|1|A2|C|24
6HCJ|1|A2|A|25
*
6HCJ|1|A2|U|649
6HCJ|1|A2|A|650
6HCJ|1|A2|U|651
6HCJ|1|A2|U|652
6HCJ|1|A2|A|653

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain K2

Ribosomal protein S9 (Predicted)

Chain Y2

uS12