IL_6HCJ_279

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AAUACAGGACU*AGGCCCUGUAAUU

Length

24 nucleotides

Bulged bases

6HCJ|1|A2|C|549, 6HCJ|1|A2|A|555

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|A2|A|528
6HCJ|1|A2|A|529
6HCJ|1|A2|U|530
6HCJ|1|A2|A|531
6HCJ|1|A2|C|532
6HCJ|1|A2|A|533
6HCJ|1|A2|G|534
6HCJ|1|A2|G|535
6HCJ|1|A2|A|536
6HCJ|1|A2|C|537
6HCJ|1|A2|U|538
*
6HCJ|1|A2|A|545
6HCJ|1|A2|G|546
6HCJ|1|A2|G|547
6HCJ|1|A2|C|548
6HCJ|1|A2|C|549
6HCJ|1|A2|C|550
6HCJ|1|A2|U|551
6HCJ|1|A2|G|552
6HCJ|1|A2|U|553
6HCJ|1|A2|A|554
6HCJ|1|A2|A|555
6HCJ|1|A2|U|556
6HCJ|1|A2|U|557

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain K2

Ribosomal protein S9 (Predicted)

Chain f2

40S ribosomal protein S30