3D structure

PDB id
6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
UGGUGCCAG*CGGUAAUUCCA
Length
20 nucleotides
Bulged bases
6HCJ|1|A2|A|628, 6HCJ|1|A2|U|630, 6HCJ|1|A2|U|631
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6HCJ|1|A2|U|609
6HCJ|1|A2|G|610
6HCJ|1|A2|G|611
6HCJ|1|A2|U|612
6HCJ|1|A2|G|613
6HCJ|1|A2|C|614
6HCJ|1|A2|C|615
6HCJ|1|A2|A|616
6HCJ|1|A2|G|617
*
6HCJ|1|A2|C|624
6HCJ|1|A2|G|625
6HCJ|1|A2|G|626
6HCJ|1|A2|U|627
6HCJ|1|A2|A|628
6HCJ|1|A2|A|629
6HCJ|1|A2|U|630
6HCJ|1|A2|U|631
6HCJ|1|A2|C|632
6HCJ|1|A2|C|633
6HCJ|1|A2|A|634

Current chains

Chain A2
18S ribosomal RNA

Nearby chains

Chain E2
uS3
Chain Y2
uS12
Chain f2
40S ribosomal protein S30
Chain q3
Transfer RNA; tRNA
Chain v3
mRNA

Coloring options:

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