IL_6HCJ_280
3D structure
- PDB id
- 6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UGGUGCCAG*CGGUAAUUCCA
- Length
- 20 nucleotides
- Bulged bases
- 6HCJ|1|A2|A|628, 6HCJ|1|A2|U|630, 6HCJ|1|A2|U|631
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCJ|1|A2|U|609
6HCJ|1|A2|G|610
6HCJ|1|A2|G|611
6HCJ|1|A2|U|612
6HCJ|1|A2|G|613
6HCJ|1|A2|C|614
6HCJ|1|A2|C|615
6HCJ|1|A2|A|616
6HCJ|1|A2|G|617
*
6HCJ|1|A2|C|624
6HCJ|1|A2|G|625
6HCJ|1|A2|G|626
6HCJ|1|A2|U|627
6HCJ|1|A2|A|628
6HCJ|1|A2|A|629
6HCJ|1|A2|U|630
6HCJ|1|A2|U|631
6HCJ|1|A2|C|632
6HCJ|1|A2|C|633
6HCJ|1|A2|A|634
Current chains
- Chain A2
- 18S ribosomal RNA
Nearby chains
- Chain E2
- uS3
- Chain Y2
- uS12
- Chain f2
- 40S ribosomal protein S30
- Chain q3
- Transfer RNA; tRNA
- Chain v3
- mRNA
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