IL_6HCJ_284

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCCGCUAG*CUUGGACCGGC

Length

19 nucleotides

Bulged bases

6HCJ|1|A2|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|A2|G|949
6HCJ|1|A2|C|950
6HCJ|1|A2|C|951
6HCJ|1|A2|G|952
6HCJ|1|A2|C|953
6HCJ|1|A2|U|954
6HCJ|1|A2|A|955
6HCJ|1|A2|G|956
*
6HCJ|1|A2|C|967
6HCJ|1|A2|U|968
6HCJ|1|A2|U|969
6HCJ|1|A2|G|970
6HCJ|1|A2|G|971
6HCJ|1|A2|A|972
6HCJ|1|A2|C|973
6HCJ|1|A2|C|974
6HCJ|1|A2|G|975
6HCJ|1|A2|G|976
6HCJ|1|A2|C|977

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain 51

Large subunit ribosomal RNA; LSU rRNA

Chain A3

Ribosomal protein L8

Chain C2

40S ribosomal protein S3a

Chain P2

uS11