IL_6HCJ_286

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAUGCGG*CCGGGCAG

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|A2|C|1098
6HCJ|1|A2|G|1099
6HCJ|1|A2|A|1100
6HCJ|1|A2|U|1101
6HCJ|1|A2|G|1102
6HCJ|1|A2|C|1103
6HCJ|1|A2|G|1104
6HCJ|1|A2|G|1105
*
6HCJ|1|A2|C|1127
6HCJ|1|A2|C|1128
6HCJ|1|A2|G|1129
6HCJ|1|A2|G|1130
6HCJ|1|A2|G|1131
6HCJ|1|A2|C|1132
6HCJ|1|A2|A|1133
6HCJ|1|A2|G|1134

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain B2

uS2

Chain C2

40S ribosomal protein S3a

Chain O2

uS15

Chain S2

eS17

Chain b2

eS26

Chain c2

40S ribosomal protein S27