IL_6HCJ_287

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGGAGUAUGGUU*AGCUGAAACU

Length

22 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|A2|G|1167
6HCJ|1|A2|G|1168
6HCJ|1|A2|G|1169
6HCJ|1|A2|A|1170
6HCJ|1|A2|G|1171
6HCJ|1|A2|U|1172
6HCJ|1|A2|A|1173
6HCJ|1|A2|U|1174
6HCJ|1|A2|G|1175
6HCJ|1|A2|G|1176
6HCJ|1|A2|U|1177
6HCJ|1|A2|U|1178
*
6HCJ|1|A2|A|1183
6HCJ|1|A2|G|1184
6HCJ|1|A2|C|1185
6HCJ|1|A2|U|1186
6HCJ|1|A2|G|1187
6HCJ|1|A2|A|1188
6HCJ|1|A2|A|1189
6HCJ|1|A2|A|1190
6HCJ|1|A2|C|1191
6HCJ|1|A2|U|1192

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain 51

Large subunit ribosomal RNA; LSU rRNA

Chain Y2

uS12

Chain n3

eL41

Chain p3

eL43